| In this section information on the common genetic and genomics resources producted by ICGN activites will be progressively on line.
Few existing databases related with coffee genomics are also listed.
The availability of this information must be clear.
- TropgeneDB
TropGENE DB is a database that manages genetic and genomic information about tropical crops. A new module for coffee was implemented recently.
- CoffeeDNA DB
CoffeeDNA is an Open Source Database on Coffee Genomics, includes comprehensive information on the large coffee germplasm; Coffea specific Microsatellites; Transposons; SNPs; Expressed Sequence Tags sequences; Gene profiling based of ESTs; Web tools in bioinformatics and more.
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MoccaDB is an online open source database that houses annotated and/or mapped microsatellite markers for Rubiaceae. The database stores markers that have been defined on ESTs and genomic sequences. Marker information was retrieved from published works, and completed with original data. Markers were tested for cross-amplification and diversity/polymorphism status Rubiaceae species. Data can be browsed and downloaded, along with protocols used, using a standard web browser. MoccaDB also integrates bioinformatics tools (CMap viewer and local BLAST) and hyperlinks to related external data sources.
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